One person was missing in the western prefecture of Hiroshima, and 115 others were injured across western Japan, the agency said. Most of injuries were minor, with people falling down in the rainstorm, hit by shards of broken windows or flying objects.
More than 130,000 homes, most of them in the Kyushu region, were still without power on Tuesday morning, according to the Economy and Industry Ministry. Many convenience stores were at one point closed and some distribution of supplies has been delayed.
Most transportation returned to normal on Tuesday when commuters returned to work after a three-day weekend. Bullet trains and most ground transportation resumed operation, but dozens of flights were grounded in northeastern Japan.
The tropical storm has headed out to the Pacific Ocean off northern Japanese coast, the Japan Meteorological Agency said on Tuesday.